Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| COAD | rs41282459 | chr22:17619393 | A/G | 5.4E-8 | 259 | 19.32 | 12.7 | 5.73 | KM Plot |
| COAD | rs4362071 | chr10:135227656 | C/G | 6.79E-7 | 252 | 19.3 | 16.87 | 14.73 | KM Plot |
| COAD | rs4567398 | chr10:52616922 | C/T | 0 | 256 | 17.45 | 23.93 | 1.97 | KM Plot |
| COAD | rs4768873 | chr12:51548400 | C/A | 1.85E-5 | 262 | 18.9 | 17.53 | 7.87 | KM Plot |
| COAD | rs4837401 | chr9:132465479 | A/G | 1.21E-6 | 260 | 18.08 | 21.53 | 4.1 | KM Plot |
| COAD | rs4838840 | chr22:50562803 | A/C | 5.32E-14 | 264 | 17.53 | 19.52 | 3.07 | KM Plot |
| COAD | rs4905163 | chr14:94570770 | A/G | 9.72E-6 | 265 | 22.33 | 17.82 | 8.38 | KM Plot |
| COAD | rs56006127 | chr3:183757626 | G/A | 6.96E-9 | 254 | 18.08 | 15.83 | 4.87 | KM Plot |
| COAD | rs56240601 | chr6:7875056 | C/G | 4.01E-6 | 261 | 18.08 | 24.5 | 3.52 | KM Plot |
| COAD | rs56312451 | chr6:78964793 | C/CT | 1.99E-5 | 262 | 18.03 | 21.3 | 5.73 | KM Plot |
| COAD | rs56365132 | chr3:183754585 | C/T | 6.92E-9 | 255 | 18.07 | 15.83 | 4.87 | KM Plot |
| COAD | rs57768942 | chr12:51558925 | T/C | 1.77E-5 | 263 | 19.3 | 17.37 | 7.87 | KM Plot |
| COAD | rs5900048 | chr9:116036816 | G/GA | 1.69E-5 | 257 | 18.1 | 17.17 | 3.63 | KM Plot |
| COAD | rs59730329 | chr12:56431837 | A/AAT | 2.74E-5 | 261 | 18.05 | 22.33 | 5.87 | KM Plot |
| COAD | rs62359226 | chr5:54611158 | A/C | 2.04E-5 | 261 | 17.8 | 17.37 | 5.73 | KM Plot |